HL_8CAI_021

3D structure

PDB id

8CAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin and Hygromycin B bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8CAI|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAI_021 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0943

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

8CAI|1|A|G|1089
8CAI|1|A|U|1090
8CAI|1|A|U|1091
8CAI|1|A|A|1092
8CAI|1|A|A|1093
8CAI|1|A|G|1094
8CAI|1|A|U|1095
8CAI|1|A|C|1096

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain U

Small ribosomal subunit protein bS21