HL_8CAM_004

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8CAM|1|a|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAM_004 not in the Motif Atlas

Geometric match to HL_4PDB_001

Geometric discrepancy: 0.1449

The information below is about HL_4PDB_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8CAM|1|a|U|137
8CAM|1|a|U|138
8CAM|1|a|U|139
8CAM|1|a|C|140
8CAM|1|a|G|141
8CAM|1|a|A|142

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23