8CAM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8CAM_001 | 1/a/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.2 | |
| HL_8CAM_002 | 1/a/87:95 | No text annotation | homologous HL_5J7L_135 HL_77600.1 | |
| HL_8CAM_003 | 1/a/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_8CAM_004 | 1/a/137:142 | UNCG | geometric HL_4PDB_001 HL_34617.3 | |
| HL_8CAM_005 | 1/a/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_8CAM_006 | 1/a/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.1 | |
| HL_8CAM_007 | 1/a/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_8CAM_008 | 1/a/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.1 | |
| HL_8CAM_009 | 1/a/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.2 | |
| HL_8CAM_010 | 1/a/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.3 | |
| HL_8CAM_011 | 1/a/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.1 | |
| HL_8CAM_012 | 1/a/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_8CAM_013 | 1/a/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.2 | |
| HL_8CAM_014 | 1/a/462:467 | GNRA | homologous HL_5J7L_147 HL_37824.4 | |
| HL_8CAM_015 | 1/a/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.4 | |
| HL_8CAM_071 | 1/a/545:548 | No text annotation | ||
| HL_8CAM_017 | 1/a/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 HL_28252.3 | |
| HL_8CAM_018 | 1/a/611:617 | GNRA | geometric HL_3DIL_003 HL_30068.1 | |
| HL_8CAM_019 | 1/a/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.4 | |
| HL_8CAM_020 | 1/a/641:647 | No text annotation | homologous HL_5J7L_153 HL_20554.2 | |
| HL_8CAM_022 | 1/a/744:753 | No text annotation | homologous HL_5J7L_155 HL_88205.1 | |
| HL_8CAM_023 | 1/a/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_8CAM_024 | 1/a/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_8CAM_069 | 1/a/955:962 | GNRA | homologous HL_5J7L_211 HL_37824.4 | |
| HL_8CAM_027 | 1/a/978:985 | No text annotation | homologous HL_5J7L_160 HL_42998.1 | |
| HL_8CAM_030 | 1/a/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.4 | |
| HL_8CAM_031 | 1/a/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.3 | |
| HL_8CAM_032 | 1/a/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.1 | |
| HL_8CAM_033 | 1/a/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.4 | |
| HL_8CAM_034 | 1/a/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.1 | |
| HL_8CAM_035 | 1/a/1451:1459 | Mini UNCG with extended bulge | geometric HL_5J7L_169 HL_22622.1 | |
| HL_8CAM_036 | 1/a/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.1 | |
| HL_8CAM_037 | 1/a/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.3 | |
| HL_8CAM_038 | 1/a/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_46878.1 | |
| HL_8CAM_039 | 1/a/1612:1619 | No text annotation | homologous HL_5J7L_173 HL_89567.1 | |
| HL_8CAM_040 | 1/a/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.4 | |
| HL_8CAM_041 | 1/a/1691:1696 | UNCG | homologous HL_5J7L_175 HL_34617.3 | |
| HL_8CAM_042 | 1/a/1727:1733 | No text annotation | geometric HL_5J7L_018 HL_37344.1 | |
| HL_8CAM_043 | 1/a/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.1 | |
| HL_8CAM_044 | 1/a/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.1 | |
| HL_8CAM_045 | 1/a/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_8CAM_046 | 1/a/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.4 | |
| HL_8CAM_047 | 1/a/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.1 | |
| HL_8CAM_048 | 1/a/2027:2036 | No text annotation | homologous HL_5J7L_183 HL_61996.1 | |
| HL_8CAM_050 | 1/a/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.2 | |
| HL_8CAM_051 | 1/a/2248:2256 | No text annotation | homologous HL_5J7L_186 HL_85367.1 | |
| HL_8CAM_052 | 1/a/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.1 | |
| HL_8CAM_054 | 1/a/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.2 | |
| HL_8CAM_055 | 1/a/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.4 | |
| HL_8CAM_056 | 1/a/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.4 | |
| HL_8CAM_057 | 1/a/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.1 | |
| HL_8CAM_058 | 1/a/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_8CAM_059 | 1/a/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.2 | |
| HL_8CAM_060 | 1/a/2551:2557 | No text annotation | homologous HL_5J7L_195 HL_30068.1 | |
| HL_8CAM_061 | 1/a/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.4 | |
| HL_8CAM_062 | 1/a/2658:2663 | GNRA | homologous HL_7A0S_063 HL_37824.4 | |
| HL_8CAM_063 | 1/a/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.3 | |
| HL_8CAM_064 | 1/a/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.1 | |
| HL_8CAM_065 | 1/a/2795:2801 | Other HL | homologous HL_5J7L_200 HL_45127.1 | |
| HL_8CAM_066 | 1/a/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.5 | |
| HL_8CAM_067 | 1/a/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.4 | |
| HL_8CAM_068 | 1/b/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_46878.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8CAM_016 | GNRA related | ||
| HL_8CAM_021 | GNRA related | ||
| HL_8CAM_025 | No text annotation | ||
| HL_8CAM_026 | No text annotation | ||
| HL_8CAM_028 | No text annotation | ||
| HL_8CAM_029 | Mini UNCG | ||
| HL_8CAM_070 | No text annotation | ||
| HL_8CAM_049 | Mini UNCG | ||
| HL_8CAM_053 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8CAM_001 | 1/a/24:30, 1/a/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.1 | |
| IL_8CAM_002 | 1/a/36:37, 1/a/442:444 | Single bulged A | homologous IL_5J7L_246 IL_31462.3 | |
| IL_8CAM_003 | 1/a/43:44, 1/a/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_92540.1 | |
| IL_8CAM_004 | 1/a/81:85, 1/a/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_8CAM_005 | 1/a/183:184, 1/a/212:214 | Single stack bend | homologous IL_4WF9_007 IL_06586.2 | |
| IL_8CAM_006 | 1/a/188:194, 1/a/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.9 | |
| IL_8CAM_007 | 1/a/239:245, 1/a/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.1 | |
| IL_8CAM_008 | 1/a/269:271, 1/a/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_8CAM_010 | 1/a/274:281, 1/a/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_8CAM_012 | 1/a/293:295, 1/a/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_8CAM_013 | 1/a/481:484, 1/a/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.1 | |
| IL_8CAM_014 | 1/a/536:539, 1/a/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.13 | |
| IL_8CAM_015 | 1/a/564:566, 1/a/575:577 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 IL_10289.1 | |
| IL_8CAM_016 | 1/a/606:610, 1/a/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_8CAM_017 | 1/a/672:674, 1/a/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_8CAM_018 | 1/a/674:678, 1/a/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 IL_54041.1 | |
| IL_8CAM_019 | 1/a/697:698, 1/a/763:765 | Single bulged A | homologous IL_5J7L_261 IL_31462.3 | |
| IL_8CAM_020 | 1/a/702:703, 1/a/728:730 | Single bulged G | homologous IL_5J7L_262 IL_00225.10 | |
| IL_8CAM_021 | 1/a/703:707, 1/a/724:728 | Triple sheared | geometric IL_5J7L_263 IL_50730.1 | |
| IL_8CAM_022 | 1/a/738:740, 1/a/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.3 | |
| IL_8CAM_023 | 1/a/775:777, 1/a/787:791 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.1 | |
| IL_8CAM_024 | 1/a/837:838, 1/a/940:942 | Single stack bend | homologous IL_5J7L_266 IL_06586.2 | |
| IL_8CAM_025 | 1/a/844:847, 1/a/933:934 | Other IL | homologous IL_5J7L_267 IL_17347.1 | |
| IL_8CAM_106 | 1/a/844:848, 1/a/930:934 | No text annotation | ||
| IL_8CAM_026 | 1/a/847:848, 1/a/930:933 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_8CAM_027 | 1/a/850:851, 1/a/926:928 | Single stack bend | homologous IL_5J7L_269 IL_06586.2 | |
| IL_8CAM_028 | 1/a/856:862, 1/a/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.1 | |
| IL_8CAM_029 | 1/a/862:863, 1/a/913:915 | Minor groove platform | geometric IL_3K0J_002 IL_92540.1 | |
| IL_8CAM_030 | 1/a/864:868, 1/a/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.1 | |
| IL_8CAM_031 | 1/a/870:872, 1/a/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_10289.1 | |
| IL_8CAM_032 | 1/a/994:996, 1/a/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.14 | |
| IL_8CAM_033 | 1/a/998:1002, 1/a/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.1 | |
| IL_8CAM_034 | 1/a/1004:1011, 1/a/1150:1151 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.2 | |
| IL_8CAM_035 | 1/a/1011:1013, 1/a/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.1 | |
| IL_8CAM_036 | 1/a/1018:1024, 1/a/1140:1144 | Kink-turn related | geometric IL_5J7L_280 IL_57188.5 | |
| IL_8CAM_037 | 1/a/1024:1030, 1/a/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_8CAM_038 | 1/a/1031:1034, 1/a/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_37047.1 | |
| IL_8CAM_039 | 1/a/1038:1041, 1/a/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_54697.2 | |
| IL_8CAM_040 | 1/a/1043:1051, 1/a/1108:1112 | Kink-turn | geometric IL_5J7L_284 IL_99692.1 | |
| IL_8CAM_041 | 1/a/1196:1198, 1/a/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.1 | |
| IL_8CAM_042 | 1/a/1202:1206, 1/a/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_8CAM_043 | 1/a/1208:1215, 1/a/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.7 | |
| IL_8CAM_044 | 1/a/1262:1269, 1/a/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.9 | |
| IL_8CAM_045 | 1/a/1310:1313, 1/a/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 IL_50694.5 | |
| IL_8CAM_046 | 1/a/1319:1323, 1/a/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.10 | |
| IL_8CAM_047 | 1/a/1351:1355, 1/a/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_8CAM_048 | 1/a/1357:1361, 1/a/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.5 | |
| IL_8CAM_050 | 1/a/1415:1416, 1/a/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_8CAM_051 | 1/a/1417:1421, 1/a/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.1 | |
| IL_8CAM_052 | 1/a/1432:1435, 1/a/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.1 | |
| IL_8CAM_053 | 1/a/1437:1440, 1/a/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_8CAM_054 | 1/a/1450:1451, 1/a/1459:1461 | Single bulged U | homologous IL_5J7L_298 IL_89505.1 | |
| IL_8CAM_055 | 1/a/1468:1471, 1/a/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_8CAM_056 | 1/a/1474:1478, 1/a/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_8CAM_057 | 1/a/1481:1482, 1/a/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_8CAM_059 | 1/a/1489:1491, 1/a/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.3 | |
| IL_8CAM_060 | 1/a/1526:1529, 1/a/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_13921.1 | |
| IL_8CAM_061 | 1/a/1651:1656, 1/a/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_8CAM_062 | 1/a/1663:1665, 1/a/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.1 | |
| IL_8CAM_063 | 1/a/1666:1669, 1/a/1993:1994 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 IL_50694.5 | |
| IL_8CAM_107 | 1/a/1666:1674, 1/a/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.3 | |
| IL_8CAM_064 | 1/a/1669:1674, 1/a/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.1 | |
| IL_8CAM_065 | 1/a/1686:1691, 1/a/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_5J7L_308 IL_47346.1 | |
| IL_8CAM_066 | 1/a/1712:1718, 1/a/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.3 | |
| IL_8CAM_067 | 1/a/1720:1724, 1/a/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.1 | |
| IL_8CAM_068 | 1/a/1770:1771, 1/a/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.3 | |
| IL_8CAM_069 | 1/a/1798:1804, 1/a/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_8CAM_070 | 1/a/1837:1840, 1/a/1902:1903 | Major groove intercalation | homologous IL_5J7L_314 IL_58310.2 | |
| IL_8CAM_071 | 1/a/1841:1842, 1/a/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.2 | |
| IL_8CAM_072 | 1/a/1846:1849, 1/a/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.2 | |
| IL_8CAM_108 | 1/a/1851:1860, 1/a/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_8CAM_073 | 1/a/1864:1867, 1/a/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.4 | |
| IL_8CAM_074 | 1/a/1933:1934, 1/a/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.2 | |
| IL_8CAM_075 | 1/a/1934:1945, 1/a/1961:1964 | No text annotation | homologous IL_5J7L_319 IL_42218.1 | |
| IL_8CAM_076 | 1/a/2050:2052, 1/a/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.3 | |
| IL_8CAM_077 | 1/a/2054:2056, 1/a/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.1 | |
| IL_8CAM_109 | 1/a/2067:2069, 1/a/2442:2443 | Single bulged U | homologous IL_5J7L_388 IL_89505.1 | |
| IL_8CAM_080 | 1/a/2070:2071, 1/a/2438:2441 | Minor groove platform | geometric IL_5J7L_324 IL_92540.1 | |
| IL_8CAM_081 | 1/a/2081:2083, 1/a/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.1 | |
| IL_8CAM_082 | 1/a/2085:2087, 1/a/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_10289.1 | |
| IL_8CAM_083 | 1/a/2202:2204, 1/a/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.1 | |
| IL_8CAM_084 | 1/a/2350:2353, 1/a/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.13 | |
| IL_8CAM_085 | 1/a/2401:2403, 1/a/2414:2415 | Single bulged U | homologous IL_5J7L_334 IL_89505.1 | |
| IL_8CAM_110 | 1/a/2453:2454, 1/a/2498:2500 | No text annotation | homologous IL_5J7L_391 IL_06586.2 | |
| IL_8CAM_111 | 1/a/2454:2455, 1/a/2496:2498 | Major groove platform | homologous IL_5J7L_392 IL_48076.3 | |
| IL_8CAM_112 | 1/a/2457:2459, 1/a/2493:2494 | Major groove platform | homologous IL_5J7L_393 IL_07039.2 | |
| IL_8CAM_088 | 1/a/2459:2461, 1/a/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7A0S_086 IL_51387.1 | |
| IL_8CAM_089 | 1/a/2466:2470, 1/a/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.1 | |
| IL_8CAM_113 | 1/a/2507:2508, 1/a/2580:2582 | Major groove platform | homologous IL_5J7L_394 IL_07039.2 | |
| IL_8CAM_091 | 1/a/2510:2512, 1/a/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_5J7L_340 IL_31091.1 | |
| IL_8CAM_092 | 1/a/2512:2513, 1/a/2571:2574 | No text annotation | geometric IL_5J7L_341 IL_42626.1 | |
| IL_8CAM_093 | 1/a/2522:2523, 1/a/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_09018.1 | |
| IL_8CAM_095 | 1/a/2591:2592, 1/a/2601:2603 | Single bulged A | homologous IL_5J7L_344 IL_31462.3 | |
| IL_8CAM_096 | 1/a/2636:2640, 1/a/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_8CAM_097 | 1/a/2652:2658, 1/a/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 IL_16458.4 | |
| IL_8CAM_098 | 1/a/2680:2684, 1/a/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.10 | |
| IL_8CAM_099 | 1/a/2687:2691, 1/a/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_08296.5 | |
| IL_8CAM_100 | 1/a/2695:2696, 1/a/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.1 | |
| IL_8CAM_101 | 1/a/2737:2742, 1/a/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_8CAM_102 | 1/a/2806:2811, 1/a/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_8CAM_103 | 1/a/2838:2839, 1/a/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.3 | |
| IL_8CAM_104 | 1/a/2843:2846, 1/a/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.3 | |
| IL_8CAM_105 | 1/a/2847:2852, 1/a/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8CAM_009 | No text annotation | ||
| IL_8CAM_011 | Isolated non-canonical cWW pair | ||
| IL_8CAM_049 | Isolated non-canonical cWW pair | ||
| IL_8CAM_058 | Isolated cWH basepair | ||
| IL_8CAM_078 | No text annotation | ||
| IL_8CAM_079 | No text annotation | ||
| IL_8CAM_086 | No text annotation | ||
| IL_8CAM_087 | No text annotation | ||
| IL_8CAM_090 | No text annotation | ||
| IL_8CAM_094 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8CAM_010 | 1/a/30:31, 1/a/474:481, 1/a/509:510 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_8CAM_011 | 1/a/30:31, 1/a/474:484, 1/a/496:510 | No text annotation | homologous J3_9DFE_002 NA | |
| J3_8CAM_012 | 1/a/32:35, 1/a/445:461, 1/a/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_8CAM_013 | 1/a/56:57, 1/a/70:76, 1/a/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_8CAM_014 | 1/a/297:301, 1/a/316:325, 1/a/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_8CAM_001 | 1/a/683:689, 1/a/773:775, 1/a/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_8CAM_002 | 1/a/698:700, 1/a/732:736, 1/a/760:763 | No text annotation | homologous J3_5J7L_039 NA | |
| J3_8CAM_003 | 1/a/1298:1303, 1/a/1625:1627, 1/a/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_8CAM_004 | 1/a/1306:1309, 1/a/1605:1611, 1/a/1620:1622 | No text annotation | homologous J3_7A0S_007 NA | |
| J3_8CAM_015 | 1/a/1344:1349, 1/a/1382:1385, 1/a/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_8CAM_016 | 1/a/1424:1429, 1/a/1564:1565, 1/a/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_8CAM_006 | 1/a/2091:2093, 1/a/2196:2200, 1/a/2223:2228 | No text annotation | homologous J3_5J7L_044 NA | |
| J3_8CAM_017 | 1/a/2282:2284, 1/a/2384:2395, 1/a/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8CAM_007 | 1/a/2295:2297, 1/a/2321:2323, 1/a/2332:2337 | No text annotation | homologous J3_5J7L_045 NA | |
| J3_8CAM_008 | 1/a/2517:2520, 1/a/2545:2547, 1/a/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_8CAM_018 | 1/a/2789:2791, 1/a/2805:2806, 1/a/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_8CAM_009 | 1/a/2812:2815, 1/a/2831:2836, 1/a/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J4_8CAM_001 | 1/a/268:269, 1/a/370:375, 1/a/399:406, 1/a/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_8CAM_002 | 1/a/297:301, 1/a/316:319, 1/a/323:325, 1/a/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_8CAM_003 | 1/a/601:604, 1/a/624:628, 1/a/635:638, 1/a/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_8CAM_004 | 1/a/1270:1276, 1/a/1294:1295, 1/a/1645:1648, 1/a/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_8CAM_005 | 1/a/1310:1314, 1/a/1338:1343, 1/a/1404:1405, 1/a/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_8CAM_006 | 1/a/1313:1314, 1/a/1338:1343, 1/a/1404:1405, 1/a/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_8CAM_007 | 1/a/1444:1445, 1/a/1466:1467, 1/a/1525:1526, 1/a/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_8CAM_008 | 1/a/1772:1776, 1/a/1788:1792, 1/a/1827:1830, 1/a/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_8CAM_009 | 1/a/2285:2289, 1/a/2343:2347, 1/a/2370:2372, 1/a/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_8CAM_010 | 1/a/2643:2646, 1/a/2674:2676, 1/a/2731:2735, 1/a/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_8CAM_001 | 1/a/47:54, 1/a/116:121, 1/a/130:131, 1/a/148:150, 1/a/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_8CAM_002 | 1/a/531:533, 1/a/560:564, 1/a/577:579, 1/a/1261:1262, 1/a/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_8CAM_003 | 1/a/584:589, 1/a/668:671, 1/a/809:812, 1/a/1195:1196, 1/a/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_8CAM_004 | 1/a/1674:1682, 1/a/1706:1707, 1/a/1751:1752, 1/a/1756:1764, 1/a/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_8CAM_005 | 1/a/2057:2064, 1/a/2446:2453, 1/a/2500:2507, 1/a/2582:2588, 1/a/2606:2611 | No text annotation | ||
| J5_8CAM_006 | 1/a/2074:2077, 1/a/2243:2246, 1/a/2258:2259, 1/a/2281:2282, 1/a/2427:2435 | No text annotation | homologous J5_4WF9_007 NA | |
| J6_8CAM_001 | 1/a/45:46, 1/a/179:183, 1/a/214:224, 1/a/231:235, 1/a/262:266, 1/a/426:433 | No text annotation | ||
| J6_8CAM_002 | 1/a/2074:2077, 1/a/2243:2246, 1/a/2258:2259, 1/a/2281:2284, 1/a/2384:2395, 1/a/2421:2435 | No text annotation | ||
| J7_8CAM_001 | 1/a/8:15, 1/a/525:531, 1/a/2018:2023, 1/a/2040:2043, 1/a/2625:2630, 1/a/2788:2789, 1/a/2894:2895 | No text annotation | ||
| J7_8CAM_002 | 1/a/817:822, 1/a/835:838, 1/a/940:946, 1/a/971:976, 1/a/987:991, 1/a/1163:1164, 1/a/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8CAM_005 | No text annotation |
Coloring options: