HL_8CAM_006

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8CAM|1|a|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAM_006 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0522

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8CAM|1|a|G|194
8CAM|1|a|A|195
8CAM|1|a|A|196
8CAM|1|a|A|197
8CAM|1|a|C|198
8CAM|1|a|A|199
8CAM|1|a|U|200
8CAM|1|a|C|201

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

Large ribosomal subunit protein bL28