HL_8CAM_013

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8CAM|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAM_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0538

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8CAM|1|a|G|410
8CAM|1|a|G|411
8CAM|1|a|A|412
8CAM|1|a|C|413
8CAM|1|a|C|414
8CAM|1|a|A|415
8CAM|1|a|U|416
8CAM|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains