3D structure

PDB id
8CAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Evernimicin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.86 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
8CAM|1|a|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CAM_017 not in the Motif Atlas
Homologous match to HL_5J7L_150
Geometric discrepancy: 0.0381
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

8CAM|1|a|U|566
8CAM|1|a|U|567
8CAM|1|a|U|568
8CAM|1|a|U|569
8CAM|1|a|G|570
8CAM|1|a|U|571
8CAM|1|a|A|572
8CAM|1|a|U|573
8CAM|1|a|A|574
8CAM|1|a|A|575

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
Large ribosomal subunit protein uL3
Chain k
50S ribosomal protein L15
Chain p
Large ribosomal subunit protein bL20
Chain q
Large ribosomal subunit protein bL21
Chain z
Large ribosomal subunit protein bL32

Coloring options:


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