HL_8CAM_039

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

8CAM|1|a|A|1614, 8CAM|1|a|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAM_039 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0428

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8CAM|1|a|C|1612
8CAM|1|a|G|1613
8CAM|1|a|A|1614
8CAM|1|a|C|1615
8CAM|1|a|A|1616
8CAM|1|a|C|1617
8CAM|1|a|6MZ|1618
8CAM|1|a|G|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain r

Large ribosomal subunit protein uL22