HL_8CAM_048

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

8CAM|1|a|A|2031, 8CAM|1|a|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAM_048 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0552

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

8CAM|1|a|G|2027
8CAM|1|a|U|2028
8CAM|1|a|G|2029
8CAM|1|a|6MZ|2030
8CAM|1|a|A|2031
8CAM|1|a|G|2032
8CAM|1|a|A|2033
8CAM|1|a|U|2034
8CAM|1|a|G|2035
8CAM|1|a|C|2036

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21

Chain z

Large ribosomal subunit protein bL32