HL_8CAM_058

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAM_058 not in the Motif Atlas

Homologous match to HL_7RQB_060

Geometric discrepancy: 0.1526

The information below is about HL_7RQB_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

8CAM|1|a|A|2471
8CAM|1|a|G|2472
8CAM|1|a|U|2473
8CAM|1|a|U|2474
8CAM|1|a|C|2475
8CAM|1|a|A|2476
8CAM|1|a|U|2477
8CAM|1|a|A|2478
8CAM|1|a|U|2479

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6