HL_8CAM_066

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8CAM|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAM_066 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0433

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8CAM|1|a|G|2819
8CAM|1|a|A|2820
8CAM|1|a|A|2821
8CAM|1|a|G|2822
8CAM|1|a|A|2823
8CAM|1|a|C|2824
8CAM|1|a|G|2825
8CAM|1|a|A|2826
8CAM|1|a|C|2827

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain z

Large ribosomal subunit protein bL32