HL_8CAS_016

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

8CAS|1|2|A|492, 8CAS|1|2|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAS_016 not in the Motif Atlas

Homologous match to HL_4V88_198

Geometric discrepancy: 0.5551

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8CAS|1|2|C|491
8CAS|1|2|A|492
8CAS|1|2|U|493
8CAS|1|2|U|494
8CAS|1|2|C|495
8CAS|1|2|G|496

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain p

Eukaryotic translation initiation factor 3 subunit B