HL_8CAS_037

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

8CAS|1|2|U|1557, 8CAS|1|2|U|1558, 8CAS|1|2|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAS_037 not in the Motif Atlas

Homologous match to HL_4V88_219

Geometric discrepancy: 0.146

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

8CAS|1|2|A|1550
8CAS|1|2|U|1551
8CAS|1|2|U|1552
8CAS|1|2|G|1553
8CAS|1|2|U|1554
8CAS|1|2|A|1555
8CAS|1|2|A|1556
8CAS|1|2|U|1557
8CAS|1|2|U|1558
8CAS|1|2|A|1559
8CAS|1|2|U|1560
8CAS|1|2|U|1561

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

RPS15 isoform 1

Chain J

40S ribosomal protein S18-A

Chain N

RPS29A isoform 1