HL_8CAS_039

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

8CAS|1|2|A|1701

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAS_039 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2957

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8CAS|1|2|G|1698
8CAS|1|2|G|1699
8CAS|1|2|C|1700
8CAS|1|2|A|1701
8CAS|1|2|A|1702
8CAS|1|2|C|1703

Current chains

Chain 2

18S ribosomal RNA

Nearby chains