HL_8CBJ_003
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAAUUC
- Length
- 7 nucleotides
- Bulged bases
- 8CBJ|1|2|U|158, 8CBJ|1|2|U|159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CBJ_003 not in the Motif Atlas
- Geometric match to HL_4V88_188
- Geometric discrepancy: 0.2407
- The information below is about HL_4V88_188
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8CBJ|1|2|G|154
8CBJ|1|2|U|155
8CBJ|1|2|A|156
8CBJ|1|2|A|157
8CBJ|1|2|U|158
8CBJ|1|2|U|159
8CBJ|1|2|C|160
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6-B
- Chain Y
- 40S ribosomal protein S24-A
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