HL_8CBJ_013

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_013 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2539

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8CBJ|1|2|C|491
8CBJ|1|2|A|492
8CBJ|1|2|U|493
8CBJ|1|2|U|494
8CBJ|1|2|C|495
8CBJ|1|2|G|496

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain i

ENP1 isoform 1