HL_8CBJ_033
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8CBJ|1|2|U|1557, 8CBJ|1|2|U|1558, 8CBJ|1|2|A|1559
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CBJ_033 not in the Motif Atlas
- Geometric match to HL_4V88_219
- Geometric discrepancy: 0.1285
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8CBJ|1|2|A|1550
8CBJ|1|2|U|1551
8CBJ|1|2|U|1552
8CBJ|1|2|G|1553
8CBJ|1|2|U|1554
8CBJ|1|2|A|1555
8CBJ|1|2|A|1556
8CBJ|1|2|U|1557
8CBJ|1|2|U|1558
8CBJ|1|2|A|1559
8CBJ|1|2|U|1560
8CBJ|1|2|U|1561
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain P
- RPS15 isoform 1
- Chain S
- 40S ribosomal protein S18-A
- Chain T
- 40S ribosomal protein S19-A
- Chain k
- TSR1 isoform 1
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