HL_8CBJ_034

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

8CBJ|1|2|C|1596

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_034 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1815

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8CBJ|1|2|G|1594
8CBJ|1|2|U|1595
8CBJ|1|2|C|1596
8CBJ|1|2|A|1597
8CBJ|1|2|U|1598
8CBJ|1|2|C|1599
8CBJ|1|2|A|1600
8CBJ|1|2|G|1601
8CBJ|1|2|C|1602

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain T

40S ribosomal protein S19-A

Chain d

RPS29A isoform 1