HL_8CCS_018

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GUCUUC

Length

6 nucleotides

Bulged bases

8CCS|1|AA|C|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_018 not in the Motif Atlas

Homologous match to HL_8C3A_018

Geometric discrepancy: 0.0865

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8CCS|1|AA|G|763
8CCS|1|AA|U|764
8CCS|1|AA|C|765
8CCS|1|AA|U|766
8CCS|1|AA|U|767
8CCS|1|AA|C|768

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain OO

60S ribosomal protein L13-A