HL_8CCS_043

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8CCS|1|AA|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_043 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0434

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8CCS|1|AA|C|1923
8CCS|1|AA|U|1924
8CCS|1|AA|U|1925
8CCS|1|AA|C|1926
8CCS|1|AA|G|1927
8CCS|1|AA|G|1928

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L41-A

Chain b

60S ribosomal protein L43-A

Chain c

Small subunit ribosomal RNA; SSU rRNA