HL_8CCS_096

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8CCS|1|c|A|780, 8CCS|1|c|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_096 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3953

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8CCS|1|c|C|777
8CCS|1|c|G|778
8CCS|1|c|U|779
8CCS|1|c|A|780
8CCS|1|c|U|781
8CCS|1|c|U|782
8CCS|1|c|G|783

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain m

40S ribosomal protein S9-A