HL_8CCS_119
3D structure
- PDB id
- 8CCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.97 Å
Loop
- Sequence
- (OMC)CAAGG
- Length
- 6 nucleotides
- Bulged bases
- 8CCS|1|c|A|416
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CCS_119 not in the Motif Atlas
- Homologous match to HL_8C3A_202
- Geometric discrepancy: 0.1071
- The information below is about HL_8C3A_202
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_34617.3
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 54
Unit IDs
8CCS|1|c|OMC|414
8CCS|1|c|C|415
8CCS|1|c|A|416
8CCS|1|c|A|417
8CCS|1|c|G|418
8CCS|1|c|G|419
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L23-A
- Chain j
- 40S ribosomal protein S6-A
Coloring options: