HL_8CDL_007

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8CDL|1|AA|G|218, 8CDL|1|AA|A|219, 8CDL|1|AA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0592

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8CDL|1|AA|G|216
8CDL|1|AA|U|217
8CDL|1|AA|G|218
8CDL|1|AA|A|219
8CDL|1|AA|G|220
8CDL|1|AA|A|221
8CDL|1|AA|A|222
8CDL|1|AA|U|223
8CDL|1|AA|C|224

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain GG

60S ribosomal protein L4-A

Chain K

60S ribosomal protein L26-A