3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
UUUGGGAAUG
Length
10 nucleotides
Bulged bases
8CDL|1|AA|G|283, 8CDL|1|AA|A|284, 8CDL|1|AA|A|285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CDL_008 not in the Motif Atlas
Homologous match to HL_8C3A_008
Geometric discrepancy: 0.0811
The information below is about HL_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

8CDL|1|AA|U|278
8CDL|1|AA|U|279
8CDL|1|AA|U|280
8CDL|1|AA|G|281
8CDL|1|AA|G|282
8CDL|1|AA|G|283
8CDL|1|AA|A|284
8CDL|1|AA|A|285
8CDL|1|AA|U|286
8CDL|1|AA|G|287

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain M
60S ribosomal protein L28
Chain OO
60S ribosomal protein L13-A
Chain QQ
60S ribosomal protein L15-A
Chain a
60S ribosomal protein L42-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2704 s