HL_8CDL_023

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8CDL|1|AA|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_023 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.2245

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8CDL|1|AA|C|1023
8CDL|1|AA|G|1024
8CDL|1|AA|A|1025
8CDL|1|AA|A|1026
8CDL|1|AA|A|1027
8CDL|1|AA|U|1028
8CDL|1|AA|G|1029

Current chains

Chain AA

25S ribosomal RNA

Nearby chains