HL_8CDL_054

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

U(UR3)AAACG(A2M)UAACG

Length

13 nucleotides

Bulged bases

8CDL|1|AA|A|2637, 8CDL|1|AA|C|2644

QA status

Modified nucleotides: UR3, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_054 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.084

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8CDL|1|AA|U|2633
8CDL|1|AA|UR3|2634
8CDL|1|AA|A|2635
8CDL|1|AA|A|2636
8CDL|1|AA|A|2637
8CDL|1|AA|C|2638
8CDL|1|AA|G|2639
8CDL|1|AA|A2M|2640
8CDL|1|AA|U|2641
8CDL|1|AA|A|2642
8CDL|1|AA|A|2643
8CDL|1|AA|C|2644
8CDL|1|AA|G|2645

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L21-A

Chain MM

60S ribosomal protein L10

Chain N

60S ribosomal protein L29