3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
CGGAAAGG
Length
8 nucleotides
Bulged bases
8CDL|1|AA|A|3243, 8CDL|1|AA|A|3244
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CDL_068 not in the Motif Atlas
Homologous match to HL_5TBW_069
Geometric discrepancy: 0.1038
The information below is about HL_5TBW_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_24596.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
7

Unit IDs

8CDL|1|AA|C|3240
8CDL|1|AA|G|3241
8CDL|1|AA|G|3242
8CDL|1|AA|A|3243
8CDL|1|AA|A|3244
8CDL|1|AA|A|3245
8CDL|1|AA|G|3246
8CDL|1|AA|G|3247

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L16-A
Chain FF
60S ribosomal protein L3

Coloring options:


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