HL_8CDL_072
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- GGUGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CDL_072 not in the Motif Atlas
- Homologous match to HL_5TBW_186
- Geometric discrepancy: 0.1061
- The information below is about HL_5TBW_186
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8CDL|1|BB|G|88
8CDL|1|BB|G|89
8CDL|1|BB|U|90
8CDL|1|BB|G|91
8CDL|1|BB|A|92
8CDL|1|BB|C|93
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 60S ribosomal protein L20-A
- Chain JJ
- 60S ribosomal protein L7-A
- Chain MM
- 60S ribosomal protein L10
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