HL_8CDL_080
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CDL_080 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0983
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8CDL|1|Cc|G|32
8CDL|1|Cc|C|33
8CDL|1|Cc|U|34
8CDL|1|Cc|C|35
8CDL|1|Cc|A|36
8CDL|1|Cc|U|37
8CDL|1|Cc|A|38
8CDL|1|Cc|A|39
8CDL|1|Cc|C|40
Current chains
- Chain Cc
- Transfer RNA fMet
Nearby chains
- Chain Dd
- Messenger RNA
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
- Chain s
- 40S ribosomal protein S16-A
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