HL_8CDL_109
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- UUUCAAG
- Length
- 7 nucleotides
- Bulged bases
- 8CDL|1|c|U|1398, 8CDL|1|c|C|1399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CDL_109 not in the Motif Atlas
- Geometric match to HL_5J7L_179
- Geometric discrepancy: 0.2467
- The information below is about HL_5J7L_179
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_04783.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8CDL|1|c|U|1396
8CDL|1|c|U|1397
8CDL|1|c|U|1398
8CDL|1|c|C|1399
8CDL|1|c|A|1400
8CDL|1|c|A|1401
8CDL|1|c|G|1402
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 4
- 40S ribosomal protein S28-A
- Chain t
- 40S ribosomal protein S17-A
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