HL_8CDL_110

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_110 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2046

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8CDL|1|c|C|1501
8CDL|1|c|G|1502
8CDL|1|c|A|1503
8CDL|1|c|G|1504
8CDL|1|c|A|1505
8CDL|1|c|G|1506

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain r

40S ribosomal protein S15

Chain u

40S ribosomal protein S18-A

Chain v

40S ribosomal protein S19-A