HL_8CDR_012

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDR_012 not in the Motif Atlas

Homologous match to HL_5TBW_012

Geometric discrepancy: 0.469

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8CDR|1|AA|C|543
8CDR|1|AA|C|544
8CDR|1|AA|U|545
8CDR|1|AA|C|546
8CDR|1|AA|G|547
8CDR|1|AA|G|548

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L9-A