HL_8CDR_056

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

U(UR3)AAACG(A2M)UAACG

Length

13 nucleotides

Bulged bases

8CDR|1|AA|A|2637, 8CDR|1|AA|C|2644

QA status

Modified nucleotides: UR3, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDR_056 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0785

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8CDR|1|AA|U|2633
8CDR|1|AA|UR3|2634
8CDR|1|AA|A|2635
8CDR|1|AA|A|2636
8CDR|1|AA|A|2637
8CDR|1|AA|C|2638
8CDR|1|AA|G|2639
8CDR|1|AA|A2M|2640
8CDR|1|AA|U|2641
8CDR|1|AA|A|2642
8CDR|1|AA|A|2643
8CDR|1|AA|C|2644
8CDR|1|AA|G|2645

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L21-A

Chain MM

60S ribosomal protein L10

Chain N

60S ribosomal protein L29