HL_8CDR_061
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 8CDR|1|AA|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CDR_061 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.0501
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8CDR|1|AA|C|2776
8CDR|1|AA|G|2777
8CDR|1|AA|G|2778
8CDR|1|AA|A|2779
8CDR|1|AA|A|2780
8CDR|1|AA|U|2781
8CDR|1|AA|U|2782
8CDR|1|AA|U|2783
8CDR|1|AA|G|2784
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain M
- 60S ribosomal protein L28
- Chain OO
- 60S ribosomal protein L13-A
- Chain U
- 60S ribosomal protein L36-A
- Chain a
- 60S ribosomal protein L42-A
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