HL_8CDR_092
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8CDR|1|c|C|402, 8CDR|1|c|G|403
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CDR_092 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0939
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8CDR|1|c|C|393
8CDR|1|c|C|394
8CDR|1|c|U|395
8CDR|1|c|G|396
8CDR|1|c|A|397
8CDR|1|c|G|398
8CDR|1|c|A|399
8CDR|1|c|A|400
8CDR|1|c|A|401
8CDR|1|c|C|402
8CDR|1|c|G|403
8CDR|1|c|G|404
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S24-A
- Chain h
- 40S ribosomal protein S4-A
- Chain j
- 40S ribosomal protein S6-A
- Chain l
- 40S ribosomal protein S8-B
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