HL_8CDR_103

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8CDR|1|c|U|1059, 8CDR|1|c|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDR_103 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.5775

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61768.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8CDR|1|c|U|1055
8CDR|1|c|U|1056
8CDR|1|c|U|1057
8CDR|1|c|U|1058
8CDR|1|c|U|1059
8CDR|1|c|U|1060
8CDR|1|c|A|1061
8CDR|1|c|A|1062
8CDR|1|c|U|1063
8CDR|1|c|G|1064

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 3

40S ribosomal protein S27-A

Chain e

40S ribosomal protein S1-A