HL_8CDR_116
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- UCUUG(1MA)AAC(A2M)
- Length
- 10 nucleotides
- Bulged bases
- 8CDR|1|AA|C|648
- QA status
- Modified nucleotides: 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CDR_116 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.0605
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8CDR|1|AA|U|640
8CDR|1|AA|C|641
8CDR|1|AA|U|642
8CDR|1|AA|U|643
8CDR|1|AA|G|644
8CDR|1|AA|1MA|645
8CDR|1|AA|A|646
8CDR|1|AA|A|647
8CDR|1|AA|C|648
8CDR|1|AA|A2M|649
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain FF
- 60S ribosomal protein L3
- Chain M
- 60S ribosomal protein L28
- Chain Q
- 60S ribosomal protein L32
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