HL_8CDU_008

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDU_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0822

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8CDU|1|A|G|328
8CDU|1|A|A|329
8CDU|1|A|C|330
8CDU|1|A|U|331
8CDU|1|A|G|332
8CDU|1|A|A|333
8CDU|1|A|G|334
8CDU|1|A|A|335
8CDU|1|A|C|336
8CDU|1|A|A|337
8CDU|1|A|C|338
8CDU|1|A|G|339
8CDU|1|A|G|340
8CDU|1|A|C|341

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain S

30S ribosomal protein S20