HL_8CDU_015

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGUGAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDU_015 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.5283

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8CDU|1|A|C|698
8CDU|1|A|G|699
8CDU|1|A|G|700
8CDU|1|A|U|701
8CDU|1|A|G|702
8CDU|1|A|A|703
8CDU|1|A|A|704
8CDU|1|A|A|705
8CDU|1|A|U|706
8CDU|1|A|G|707

Current chains

Chain A

16S rRNA

Nearby chains

Chain V

30S ribosomal protein S11