HL_8CDU_024

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8CDU|1|A|G|1104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDU_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1297

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8CDU|1|A|G|1099
8CDU|1|A|U|1100
8CDU|1|A|U|1101
8CDU|1|A|A|1102
8CDU|1|A|A|1103
8CDU|1|A|G|1104
8CDU|1|A|U|1105
8CDU|1|A|C|1106

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S2

Chain H

30S ribosomal protein S7