HL_8CDU_026

3D structure

PDB id

8CDU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rnase R bound to a 30S degradation intermediate (main state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGACAAAC

Length

9 nucleotides

Bulged bases

8CDU|1|A|C|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDU_026 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3743

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8CDU|1|A|G|1173
8CDU|1|A|U|1174
8CDU|1|A|G|1175
8CDU|1|A|A|1176
8CDU|1|A|C|1177
8CDU|1|A|A|1178
8CDU|1|A|A|1179
8CDU|1|A|A|1180
8CDU|1|A|C|1181

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Ribonuclease R

Chain D

30S ribosomal protein S2