HL_8CEH_099

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CEH_099 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1591

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8CEH|1|c|A|900
8CEH|1|c|G|901
8CEH|1|c|G|902
8CEH|1|c|U|903
8CEH|1|c|G|904
8CEH|1|c|A|905
8CEH|1|c|A|906
8CEH|1|c|A|907
8CEH|1|c|U|908
8CEH|1|c|U|909

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 2

40S ribosomal protein S26

Chain Cc

Transfer RNA; tRNA

Chain Dd

Messenger RNA

Chain q

40S ribosomal protein S14-A