HL_8CEH_117

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

(A2M)CGUGCAAAU

Length

10 nucleotides

Bulged bases

8CEH|1|AA|U|879, 8CEH|1|AA|A|883, 8CEH|1|AA|A|884

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CEH_117 not in the Motif Atlas

Homologous match to HL_8P9A_132

Geometric discrepancy: 0.0801

The information below is about HL_8P9A_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

8CEH|1|AA|A2M|876
8CEH|1|AA|C|877
8CEH|1|AA|G|878
8CEH|1|AA|U|879
8CEH|1|AA|G|880
8CEH|1|AA|C|881
8CEH|1|AA|A|882
8CEH|1|AA|A|883
8CEH|1|AA|A|884
8CEH|1|AA|U|885

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain FF

60S ribosomal protein L3

Chain V

60S ribosomal protein L37-A