HL_8P9A_132

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8P9A|1|AR|U|879, 8P9A|1|AR|A|883, 8P9A|1|AR|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8P9A|1|AR|A|876
8P9A|1|AR|C|877
8P9A|1|AR|G|878
8P9A|1|AR|U|879
8P9A|1|AR|G|880
8P9A|1|AR|C|881
8P9A|1|AR|A|882
8P9A|1|AR|A|883
8P9A|1|AR|A|884
8P9A|1|AR|U|885

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CR

60S ribosomal protein L17-A

Chain DL

60S ribosomal protein L37-A