HL_8CEP_008

3D structure

PDB id

8CEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Round2 30S head (no antibiotic)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CEP_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0696

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8CEP|1|A|A|320
8CEP|1|A|A|321
8CEP|1|A|C|322
8CEP|1|A|U|323
8CEP|1|A|G|324
8CEP|1|A|A|325
8CEP|1|A|G|326
8CEP|1|A|A|327
8CEP|1|A|C|328
8CEP|1|A|A|329
8CEP|1|A|C|330
8CEP|1|A|G|331
8CEP|1|A|G|332
8CEP|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20