3D structure

PDB id
8CEU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Retapamulin and Capreomycin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.83 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
8CEU|1|a|A|1913, 8CEU|1|a|C|1914
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CEU_045 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.3788
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

8CEU|1|a|G|1910
8CEU|1|a|PSU|1911
8CEU|1|a|A|1912
8CEU|1|a|A|1913
8CEU|1|a|C|1914
8CEU|1|a|3TD|1915
8CEU|1|a|A|1916
8CEU|1|a|PSU|1917
8CEU|1|a|A|1918
8CEU|1|a|A|1919
8CEU|1|a|C|1920

Current chains

Chain a
23S rRNA

Nearby chains

Chain C
Capreomycin IA
Chain D
Capreomycin IA
Chain V
Capreomycin IA

Coloring options:


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