HL_8CEU_051

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CEU_051 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1103

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8CEU|1|a|G|2303
8CEU|1|a|G|2304
8CEU|1|a|U|2305
8CEU|1|a|C|2306
8CEU|1|a|G|2307
8CEU|1|a|G|2308
8CEU|1|a|A|2309
8CEU|1|a|C|2310
8CEU|1|a|A|2311
8CEU|1|a|U|2312
8CEU|1|a|C|2313

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

Large ribosomal subunit protein uL5