HL_8CF5_007

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8CF5|1|AA|G|218, 8CF5|1|AA|A|219, 8CF5|1|AA|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0661

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8CF5|1|AA|G|216
8CF5|1|AA|U|217
8CF5|1|AA|G|218
8CF5|1|AA|A|219
8CF5|1|AA|G|220
8CF5|1|AA|A|221
8CF5|1|AA|A|222
8CF5|1|AA|U|223
8CF5|1|AA|C|224

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain GG

60S ribosomal protein L4-A

Chain K

60S ribosomal protein L26-A