HL_8CF5_008

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

8CF5|1|AA|G|283, 8CF5|1|AA|A|284, 8CF5|1|AA|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_008 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.0884

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8CF5|1|AA|U|278
8CF5|1|AA|U|279
8CF5|1|AA|U|280
8CF5|1|AA|G|281
8CF5|1|AA|G|282
8CF5|1|AA|G|283
8CF5|1|AA|A|284
8CF5|1|AA|A|285
8CF5|1|AA|U|286
8CF5|1|AA|G|287

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L28

Chain OO

60S ribosomal protein L13-A

Chain QQ

60S ribosomal protein L15-A

Chain a

60S ribosomal protein L42-A