HL_8CF5_027

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8CF5|1|AA|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_027 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2532

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8CF5|1|AA|C|1239
8CF5|1|AA|A|1240
8CF5|1|AA|U|1241
8CF5|1|AA|G|1242
8CF5|1|AA|G|1243
8CF5|1|AA|A|1244
8CF5|1|AA|A|1245
8CF5|1|AA|G|1246
8CF5|1|AA|U|1247
8CF5|1|AA|C|1248
8CF5|1|AA|G|1249

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain Ee

60S ribosomal protein L12-A