HL_8CF5_039

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

8CF5|1|AA|C|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_039 not in the Motif Atlas

Homologous match to HL_5TBW_039

Geometric discrepancy: 0.4929

The information below is about HL_5TBW_039

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_61202.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

8CF5|1|AA|A|1760
8CF5|1|AA|C|1761
8CF5|1|AA|C|1762
8CF5|1|AA|U|1763
8CF5|1|AA|U|1764
8CF5|1|AA|U|1765

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A